艾略特C. 布什
生物学教授
F.W. Olin Science Center, Room 1240
普拉特大道301号.
Claremont, CA 91711
909.607.0653
Eliot_布什@kgfascist.com
Education 和 Professional Experience
- 哈佛大学AB
- PhD, California Institute of Technology
- Postdoctoral Fellow, University of Chicago
研究兴趣
Our current work is in the area of microbial genome evolution. We’ve developed a computational approach to reconstructing the history of genomic isl和 insertions in clades of closely related microbes (链接到xenoGI网站). We are now improving various aspects of this method, 和 using it to study patterns of horizontal transfer across the tree of life. Additional information can be found at our 实验室网站.
面向更广泛的受众
- Our Evolutionary Past Can Teach Us about AI’s Future (Scientific American 11/2023)
- The Meaning of Time in the Place where Humanity’s Earliest Ancestors Arose (Scientific American 6/2020)
- 视频: How do we know where the p和emic coronavirus came from?
- 博客
教学
- Bio 46: Introduction to biology
- CS5 Green: a biology themed introduction to computer science
- 生物23:生物实验室
- Bio 118b: Introduction to computational biology
- Bio 188: Advanced computational biology
- 生物129:人类进化
出版物
Computational 生物学 Textbook
- 里伯斯金-哈达斯R 布什E. Computing for Biologists: Python Programming 和 Principles. 剑桥大学出版社. 2014.
Selected Articles 和 Chapters
- 刘* N., *冈萨雷斯助教, *费舍尔J, *香港C, *约翰逊M, 马哈特R, * Mugnatto F, * Soh R, * Somji年代, Wirth JS, 里伯斯金-哈达斯R 布什EC. xenoGI 3: using the DTLOR model to reconstruct the evolution of gene families in clades of microbes. BMC生物信息学. 24(295). 2023.
- Wirth JS, 布什EC. Automating microbial taxonomy workflows with PHANTASM: PHylogenomic ANalyses for the TAxonomy 和 Systematics of Microbes. 核酸研究. 51(7). 2023.
- *Liu J, 马哈特R, *Liu I, *Santichaivekin S, 布什E里伯斯金-哈达斯R. Maximum Parsimony Reconciliation in the DTLOR Model. BMC生物信息学. 22(394). 2021.
- 布什EC, 阿道夫 SC, Donaldson-Matasci MC, Hur JH, 和 Schulz D. Incorporating Programming, Modeling 和 Data Analysis into an Introductory 生物学 Course. Journal of College Science 教学. 50(3). 2021. [PDF]
- 布什EC, *克拉克AE, * DeRanek CA, *英格, *福尔曼J, *健康K, *李AB, Stoebel DM, 王* Z, *威尔伯米, 吴* H. xenoGI: reconstructing the history of genomic isl和 insertions in clades of closely related bacteria. BMC生物信息学. 19(32). 2018. [bioRxiv预印本]
- 黄* GT, Bonocora RP, * Schep一, *分为SM, 方AJ, * Shull LM, Batachari勒, *狄龙M, 埃文斯C, *贝克CJ, 布什EC, Hardin J, Wade JT, 和 Stoebel DM. Genome-Wide Transcriptional Response to Varying RpoS Levels in Escherichia coli K-12. J Bacteriol. 199:e00755-16. 2017.
- Drewell,风湿性关节炎, 布什EC, Remnant EJ, 黄* GT, *分为SM, *Stringham JL, Lim J, Gouldie F, 和 Oldroyd BP. The dynamic DNA methylation cycle from egg to sperm in the honey bee Apis mellifera. 发展. 141(13):2702-11. 2014.
- *Beeler, SM, 黄* GT, Zheng JM, 布什EC, Remnant EJ, Oldroyd BP, 和 Drewell RA. Whole Genome DNA Methylation Profile of the Jewel Wasp (Nasonia vitripennis). G3:基因、基因组、遗传学, g3-113. 2013.
- 布什EC, Clark AE*, DeBoever CM*, Haynes LE*, Hussain S*, Ma S*, McDermott MM*, Novak AM*, Wentworth JS*. (2012) Modeling the Role of Negative Cooperativity in Metabolic Regulation 和 首页ostasis. 《太阳2注册平台》 7(11): e48920.
- Nevarez PA*, DeBoever CM*, Freel和 B*J, Quitt MA* & 布什EC. Context dependent substitution biases vary within the human genome. BMC生物信息学, 11(462). 2010.
*本科作者